Bioinformatics Solutions on AWS

Deploy RShiny on AWS EC2 aws ec2 r rshiny Mar 22, 2020

If you're deploying applications on AWS one of the easier ways to get started is to simply deploy ev...

Deploy your RShiny App Locally with Docker docker r rshiny Dec 10, 2019

My favorite way to deploy RShiny locally is to simply package it into a docker image and run it. Run...

Learn Apache Airflow By Example – 4 Part Series apacheairflow docker python Dec 02, 2019

Introduction

I've been having a blast the last few months learning ApacheAirflow. It's become

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Deploy your RShiny App on AWS Series - Lightsail aws r rshiny Nov 24, 2019

If your head is spinning over which deployment scenario to choose for your RShiny app look no furthe...

Setup a Bioinformatics Demultiplex Server from Scratch bioinformatics easybuild hpc Nov 07, 2019

Install Demultiplex Software

Installing demultiplexing such as bcl2fastq, CellRanger, LongRanger,

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AWS Elastic Compute Clusters for Genomics aws bioinformatics hpc Oct 31, 2019

Amazon Web Services (AWS) gives you the ability to build out all kinds of cool infrastructure. Datab...

Deploy HPC Modules From Bioconda Packages bioinformatics easybuild hpc Oct 28, 2019

The Struggle is Real

I have been working in Bioinformatics for nearly 10 years, mostly

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Dask Tips and Tricks – HighLevelGraphs Oct 24, 2019

Dask is an open source project in Python that allows you to scale your code on your laptop or on a c...

Dask Tips and Tricks – Parallelize a For Loop Oct 21, 2019

If you're in the scientific computing space there's a good chance you've used Python. A relatively

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Dask on HPC dask distributed computing hpc parallel computing python Sep 26, 2019

Recently I saw that Dask, a distributed Python library, created some really handy wrappers for

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Deploy Bioinformatics Modules on HPC Sep 23, 2019

Deploying scientific software in an HPC environment can be challenging. Deploying bioinformatics s

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Kubernetes on AWS – Getting Started with EKS aws docker kubernetes Jul 15, 2019

AWS Elastic Kubernetes Service (EKS) is a fully managed service AWS launched recently. Elastic servi...

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