Bioinformatics Solutions on AWS

Using LLMs to Query PubMed Knowledgebases for BioMedical Research ai Jul 19, 2024

Part 1: Creating the Knowledgebase

In this article, we'll explore how to leverage large...

Bioinformatics Solutions on AWS Book - Preview apacheairflow aws bioinformatics kubernetes parallel computing Apr 17, 2021

This is the introductory chapter to my new book, Bioinformatics Solutions on AWS.

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Bioinformatics Solutions on AWS For Exploratory Analysis aws bioinformatics distributed computing hpc python Aug 10, 2020

This is part 1 of a series I have in the works about Bioinformatics Solutions on AWS. Each part...

Get a Fully Configured Apache Airflow Docker Dev Stack with Bitnami apache airflow Aug 02, 2020

I've been using it for around 2 years now to build out custom workflow interfaces, like those...

Deploy Dash with Helm on Kubernetes with AWS EKS aws dash eks kubernetes python Jul 14, 2020

Today we are going to be talking about Deploying a Dash App on Kubernetes with a Helm Chart using...

RShiny Authentication with Polished on AWS Kubernetes aws kubernetes r rshiny Jun 28, 2020

If you're looking for a hassle free way to add authentication to your RShiny Apps you should...

Manage High Content Screening CellProfiler Pipelines with Apache Airflow apache airflow bioinformatics cellprofiler high content screening May 31, 2020

If you are running a High Content Screening Pipeline you probably have a lot of moving pieces. As...

Deploy and Scale your Dask Cluster with Kubernetes aws dask data science kubernetes python May 18, 2020

Dask is a parallel computing library for Python. I think of it as being like MPI without actually...

Setup a High Content Screening Imaging Platform with Label Studio high content screening machine learning May 07, 2020

For a few years now I have been on a quest to find a tool I really like for annotating HCS images...

Deploy RShiny with Kubernetes using AWS EKS and Terraform aws eks kubernetes r rshiny terraform Apr 23, 2020

Deploy RShiny on AWS EKS with Terraform

Today we will be deploying the rocker/shiny...

Deploy RShiny with the Rocker/Shiny Docker Image docker r rshiny Apr 13, 2020

If you are deploying RShiny with docker you can roll your own image , or you can use the rocker...

Deploy RShiny on Kubernetes with a Helm Chart helm kubernetes r rshiny Apr 01, 2020

If you want a very robust solution to deploy your RShiny applications a managed Kubernetes...

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